Index

_

__enter__() (science_jubilee.Machine.Machine method) __eq__() (science_jubilee.labware.Labware.Location method) (science_jubilee.tools.Pipette.Location method) (science_jubilee.tools.PumpDispenser.Location method) (science_jubilee.tools.Sonicator.Location method) (science_jubilee.tools.Spectrometer.Location method) (science_jubilee.tools.Syringe.Location method) (science_jubilee.tools.SyringeExtruder.Location method) (science_jubilee.tools.WebCamera.Location method) __exit__() (science_jubilee.Machine.Machine method) __getitem__() (science_jubilee.decks.Deck.SlotSet method) (science_jubilee.labware.Labware.WellSet method) __iter__() (science_jubilee.labware.Labware.Location method) (science_jubilee.tools.Pipette.Location method) (science_jubilee.tools.PumpDispenser.Location method) (science_jubilee.tools.Sonicator.Location method) (science_jubilee.tools.Spectrometer.Location method) (science_jubilee.tools.Syringe.Location method) (science_jubilee.tools.SyringeExtruder.Location method) (science_jubilee.tools.WebCamera.Location method) __repr__() (science_jubilee.decks.Deck.Labware method) (science_jubilee.decks.Deck.SlotSet method) (science_jubilee.labware.Labware.Labware method) (science_jubilee.labware.Labware.Location method) (science_jubilee.labware.Labware.Point method) (science_jubilee.labware.Labware.Well method) (science_jubilee.labware.Labware.WellSet method) (science_jubilee.tools.Camera.Well method) (science_jubilee.tools.Loop.Well method) (science_jubilee.tools.Pipette.Labware method) (science_jubilee.tools.Pipette.Location method) (science_jubilee.tools.Pipette.Well method) (science_jubilee.tools.PumpDispenser.Labware method) (science_jubilee.tools.PumpDispenser.Location method) (science_jubilee.tools.PumpDispenser.Well method) (science_jubilee.tools.Sonicator.Labware method) (science_jubilee.tools.Sonicator.Location method) (science_jubilee.tools.Sonicator.Well method) (science_jubilee.tools.Spectrometer.Labware method) (science_jubilee.tools.Spectrometer.Location method) (science_jubilee.tools.Spectrometer.Well method) (science_jubilee.tools.Syringe.Labware method) (science_jubilee.tools.Syringe.Location method) (science_jubilee.tools.Syringe.Well method) (science_jubilee.tools.SyringeExtruder.Labware method) (science_jubilee.tools.SyringeExtruder.Location method) (science_jubilee.tools.SyringeExtruder.Well method) (science_jubilee.tools.WebCamera.Labware method) (science_jubilee.tools.WebCamera.Location method) (science_jubilee.tools.WebCamera.Well method) _api_version (science_jubilee.tools.Spectrometer.SpectroscopyTool property) _aspirate() (science_jubilee.tools.Pipette.Pipette method) (science_jubilee.tools.Syringe.Syringe method) (science_jubilee.tools.SyringeExtruder.SyringeExtruder method) _capture_image() (science_jubilee.tools.WebCamera.Camera method) _collect_raw_spectrum() (science_jubilee.tools.Spectrometer.SpectroscopyTool method) _create_rows_and_columns() (science_jubilee.decks.Deck.Labware method) (science_jubilee.labware.Labware.Labware method) (science_jubilee.tools.Pipette.Labware method) (science_jubilee.tools.PumpDispenser.Labware method) (science_jubilee.tools.Sonicator.Labware method) (science_jubilee.tools.Spectrometer.Labware method) (science_jubilee.tools.Syringe.Labware method) (science_jubilee.tools.SyringeExtruder.Labware method) (science_jubilee.tools.WebCamera.Labware method)

_create_volume_list() (science_jubilee.tools.Pipette.Pipette method) _device_id (science_jubilee.tools.Spectrometer.SpectroscopyTool property) _dispense() (science_jubilee.tools.Pipette.Pipette method) (science_jubilee.tools.Syringe.Syringe method) (science_jubilee.tools.SyringeExtruder.SyringeExtruder method) _drop_tip() (science_jubilee.tools.Pipette.Pipette method) _expand_for_volume_contraints() (science_jubilee.tools.Pipette.Pipette static method) _extend_source_target_lists() (science_jubilee.tools.Pipette.Pipette static method) _get_rgb_avg() (science_jubilee.tools.WebCamera.Camera method) _get_slots() (science_jubilee.decks.Deck.Deck method) (science_jubilee.Machine.Deck method) _get_tool_index() (science_jubilee.Machine.Machine method) _get_top_bottom() (science_jubilee.tools.Camera.Camera static method) (science_jubilee.tools.Loop.Loop static method) _get_xyz() (science_jubilee.tools.Camera.Camera static method) (science_jubilee.tools.Loop.Loop static method) _getxyz() (science_jubilee.decks.Deck.Labware static method) (science_jubilee.labware.Labware.Labware static method) (science_jubilee.tools.Pipette.Labware static method) (science_jubilee.tools.PumpDispenser.Labware static method) (science_jubilee.tools.Sonicator.Labware static method) (science_jubilee.tools.Spectrometer.Labware static method) (science_jubilee.tools.Syringe.Labware static method) (science_jubilee.tools.SyringeExtruder.Labware static method) (science_jubilee.tools.WebCamera.Labware static method) _integration_time (science_jubilee.tools.Spectrometer.SpectroscopyTool property) _mask_image() (science_jubilee.tools.WebCamera.Camera method) _model (science_jubilee.tools.Spectrometer.SpectroscopyTool property) _move_xyzev() (science_jubilee.Machine.Machine method) _nominal_coordinates() (science_jubilee.decks.Deck.Labware static method) (science_jubilee.labware.Labware.Labware static method) (science_jubilee.tools.Pipette.Labware static method) (science_jubilee.tools.PumpDispenser.Labware static method) (science_jubilee.tools.Sonicator.Labware static method) (science_jubilee.tools.Spectrometer.Labware static method) (science_jubilee.tools.Syringe.Labware static method) (science_jubilee.tools.SyringeExtruder.Labware static method) (science_jubilee.tools.WebCamera.Labware static method) _open_device() (science_jubilee.tools.Spectrometer.SpectroscopyTool method) _pickup_tip() (science_jubilee.tools.Pipette.Pipette method) _raspberrypi_hat() (science_jubilee.tools.Sonicator.Sonicator method) _raspberrypi_pico() (science_jubilee.tools.Sonicator.Sonicator method) _serial_number (science_jubilee.tools.Spectrometer.SpectroscopyTool property) _set_absolute_extrusion() (science_jubilee.Machine.Machine method) _set_absolute_positioning() (science_jubilee.Machine.Machine method) _set_relative_extrusion() (science_jubilee.Machine.Machine method) _set_relative_positioning() (science_jubilee.Machine.Machine method) _set_sonication_power() (science_jubilee.tools.Sonicator.Sonicator method) _sonicate() (science_jubilee.tools.Sonicator.Sonicator method) _sonication_off() (science_jubilee.tools.Sonicator.Sonicator method) _sonication_on() (science_jubilee.tools.Sonicator.Sonicator method) _take_spectrum() (science_jubilee.tools.Spectrometer.SpectroscopyTool method) _translate_point() (science_jubilee.decks.Deck.Labware method) (science_jubilee.labware.Labware.Labware method) (science_jubilee.tools.Pipette.Labware method) (science_jubilee.tools.PumpDispenser.Labware method) (science_jubilee.tools.Sonicator.Labware method) (science_jubilee.tools.Spectrometer.Labware method) (science_jubilee.tools.Syringe.Labware method) (science_jubilee.tools.SyringeExtruder.Labware method) (science_jubilee.tools.WebCamera.Labware method) _usb_device (science_jubilee.tools.Spectrometer.SpectroscopyTool property)

A

absolute() (science_jubilee.labware.Labware.Point method), [1] active_tool_index (science_jubilee.Machine.Machine property), [1] add() (science_jubilee.labware.Labware.Point method), [1] add_slot() (science_jubilee.decks.Deck.Labware method) (science_jubilee.labware.Labware.Labware method), [1] (science_jubilee.tools.Pipette.Labware method) (science_jubilee.tools.PumpDispenser.Labware method) (science_jubilee.tools.Sonicator.Labware method) (science_jubilee.tools.Spectrometer.Labware method) (science_jubilee.tools.Syringe.Labware method) (science_jubilee.tools.SyringeExtruder.Labware method) (science_jubilee.tools.WebCamera.Labware method) add_tiprack() (science_jubilee.tools.Pipette.Pipette method), [1] add_waste() (science_jubilee.tools.PumpDispenser.PumpDispenser method), [1] air_gap() (science_jubilee.tools.Pipette.Pipette method), [1]

apply_offset() (science_jubilee.labware.Labware.Well method), [1] (science_jubilee.tools.Camera.Well method) (science_jubilee.tools.Loop.Well method) (science_jubilee.tools.Pipette.Well method) (science_jubilee.tools.PumpDispenser.Well method) (science_jubilee.tools.Sonicator.Well method) (science_jubilee.tools.Spectrometer.Well method) (science_jubilee.tools.Syringe.Well method) (science_jubilee.tools.SyringeExtruder.Well method) (science_jubilee.tools.WebCamera.Well method) aspirate() (science_jubilee.tools.Pipette.Pipette method), [1] (science_jubilee.tools.Syringe.Syringe method), [1] (science_jubilee.tools.SyringeExtruder.SyringeExtruder method), [1] assign_tip_to_stock() (science_jubilee.tools.Pipette.TipTracker method), [1] axis_limits (science_jubilee.Machine.Machine property), [1]

B

bedType (science_jubilee.decks.Deck.Deck property), [1] (science_jubilee.Machine.Deck property) blowout() (science_jubilee.tools.Pipette.Pipette method), [1] bottom() (science_jubilee.labware.Labware.Well method), [1] (science_jubilee.tools.Camera.Well method) (science_jubilee.tools.Loop.Well method) (science_jubilee.tools.Pipette.Well method) (science_jubilee.tools.PumpDispenser.Well method) (science_jubilee.tools.Sonicator.Well method) (science_jubilee.tools.Spectrometer.Well method) (science_jubilee.tools.Syringe.Well method) (science_jubilee.tools.SyringeExtruder.Well method) (science_jubilee.tools.WebCamera.Well method) bottom_ (science_jubilee.labware.Labware.Well property), [1] (science_jubilee.tools.Camera.Well property) (science_jubilee.tools.Loop.Well property) (science_jubilee.tools.Pipette.Well property) (science_jubilee.tools.PumpDispenser.Well property) (science_jubilee.tools.Sonicator.Well property) (science_jubilee.tools.Spectrometer.Well property) (science_jubilee.tools.Syringe.Well property) (science_jubilee.tools.SyringeExtruder.Well property) (science_jubilee.tools.WebCamera.Well property)

boxcar_width() (science_jubilee.tools.Spectrometer.SpectroscopyTool method) brand (science_jubilee.decks.Deck.Labware property) (science_jubilee.labware.Labware.Labware property), [1] (science_jubilee.tools.Pipette.Labware property) (science_jubilee.tools.PumpDispenser.Labware property) (science_jubilee.tools.Sonicator.Labware property) (science_jubilee.tools.Spectrometer.Labware property) (science_jubilee.tools.Syringe.Labware property) (science_jubilee.tools.SyringeExtruder.Labware property) (science_jubilee.tools.WebCamera.Labware property)

C

CalibrationControlPanel module Camera (class in science_jubilee.tools.Camera) (class in science_jubilee.tools.WebCamera), [1] capture_image() (science_jubilee.tools.WebCamera.Camera method), [1] check_bounds() (science_jubilee.tools.Syringe.Syringe method), [1] (science_jubilee.tools.SyringeExtruder.SyringeExtruder method), [1] clean_tip (science_jubilee.labware.Labware.Well attribute), [1] (science_jubilee.tools.Camera.Well attribute) (science_jubilee.tools.Loop.Well attribute) (science_jubilee.tools.Pipette.Well attribute) (science_jubilee.tools.PumpDispenser.Well attribute) (science_jubilee.tools.Sonicator.Well attribute) (science_jubilee.tools.Spectrometer.Well attribute) (science_jubilee.tools.Syringe.Well attribute) (science_jubilee.tools.SyringeExtruder.Well attribute) (science_jubilee.tools.WebCamera.Well attribute)

collect_spectrum() (science_jubilee.tools.Spectrometer.SpectroscopyTool method) Column (class in science_jubilee.labware.Labware), [1] configured_axes (science_jubilee.Machine.Machine property), [1] configured_tools (science_jubilee.Machine.Machine property), [1] connect() (science_jubilee.Machine.Machine method), [1] create_app() (in module science_jubilee.tools.piserver), [1]

D

dark_spectrum() (science_jubilee.tools.Spectrometer.SpectroscopyTool method) Deck (class in science_jubilee.decks.Deck), [1] (class in science_jubilee.Machine) deck_material (science_jubilee.decks.Deck.Deck property), [1] (science_jubilee.Machine.Deck property) decode_image() (science_jubilee.tools.WebCamera.Camera method), [1] depth (science_jubilee.labware.Labware.Well attribute), [1] (science_jubilee.tools.Camera.Well attribute) (science_jubilee.tools.Loop.Well attribute) (science_jubilee.tools.Pipette.Well attribute) (science_jubilee.tools.PumpDispenser.Well attribute) (science_jubilee.tools.Sonicator.Well attribute) (science_jubilee.tools.Spectrometer.Well attribute) (science_jubilee.tools.Syringe.Well attribute) (science_jubilee.tools.SyringeExtruder.Well attribute) (science_jubilee.tools.WebCamera.Well attribute) diameter (science_jubilee.labware.Labware.Well attribute), [1] (science_jubilee.tools.Camera.Well attribute) (science_jubilee.tools.Loop.Well attribute) (science_jubilee.tools.Pipette.Well attribute) (science_jubilee.tools.PumpDispenser.Well attribute) (science_jubilee.tools.Sonicator.Well attribute) (science_jubilee.tools.Spectrometer.Well attribute) (science_jubilee.tools.Syringe.Well attribute) (science_jubilee.tools.SyringeExtruder.Well attribute) (science_jubilee.tools.WebCamera.Well attribute) dimensions (science_jubilee.decks.Deck.Labware property) (science_jubilee.labware.Labware.Labware property), [1] (science_jubilee.tools.Pipette.Labware property) (science_jubilee.tools.PumpDispenser.Labware property) (science_jubilee.tools.Sonicator.Labware property) (science_jubilee.tools.Spectrometer.Labware property) (science_jubilee.tools.Syringe.Labware property) (science_jubilee.tools.SyringeExtruder.Labware property) (science_jubilee.tools.WebCamera.Labware property)

disconnect() (science_jubilee.Machine.Machine method), [1] dispense() (science_jubilee.tools.Pipette.Pipette method), [1] (science_jubilee.tools.PumpDispenser.PumpDispenser method), [1] (science_jubilee.tools.Syringe.Syringe method), [1] (science_jubilee.tools.SyringeExtruder.SyringeExtruder method), [1] display_name (science_jubilee.decks.Deck.Labware property) (science_jubilee.labware.Labware.Labware property), [1] (science_jubilee.tools.Pipette.Labware property) (science_jubilee.tools.PumpDispenser.Labware property) (science_jubilee.tools.Sonicator.Labware property) (science_jubilee.tools.Spectrometer.Labware property) (science_jubilee.tools.Syringe.Labware property) (science_jubilee.tools.SyringeExtruder.Labware property) (science_jubilee.tools.WebCamera.Labware property) dist() (science_jubilee.tools.SyringeExtruder.SyringeExtruder method), [1] dist_name (in module science_jubilee) download_file() (science_jubilee.Machine.Machine method), [1] drop_tip() (science_jubilee.tools.Pipette.Pipette method), [1] dwell() (science_jubilee.Machine.Machine method), [1]

E

empty_lines() (science_jubilee.tools.PumpDispenser.PumpDispenser method), [1]

F

from_config() (science_jubilee.tools.PeristalticPumps.PeristalticPumps class method), [1] (science_jubilee.tools.Pipette.Pipette class method), [1] (science_jubilee.tools.PumpDispenser.PumpDispenser class method), [1] (science_jubilee.tools.WebCamera.Camera class method), [1]

G

gcode() (science_jubilee.Machine.Machine method), [1] generate_file() (science_jubilee.tools.Spectrometer.MeasurementManager method) get_camera_indices() (science_jubilee.tools.Camera.Camera method) get_column() (science_jubilee.decks.Deck.Labware method) (science_jubilee.labware.Labware.Labware method), [1] (science_jubilee.tools.Pipette.Labware method) (science_jubilee.tools.PumpDispenser.Labware method) (science_jubilee.tools.Sonicator.Labware method) (science_jubilee.tools.Spectrometer.Labware method) (science_jubilee.tools.Syringe.Labware method) (science_jubilee.tools.SyringeExtruder.Labware method) (science_jubilee.tools.WebCamera.Labware method) get_frame() (science_jubilee.tools.Camera.Camera method)

get_position() (science_jubilee.Machine.Machine method), [1] get_root_dir() (in module science_jubilee.Machine), [1] (science_jubilee.decks.Plate.Plate method), [1] get_row() (science_jubilee.decks.Deck.Labware method) (science_jubilee.labware.Labware.Labware method), [1] (science_jubilee.tools.Pipette.Labware method) (science_jubilee.tools.PumpDispenser.Labware method) (science_jubilee.tools.Sonicator.Labware method) (science_jubilee.tools.Spectrometer.Labware method) (science_jubilee.tools.Syringe.Labware method) (science_jubilee.tools.SyringeExtruder.Labware method) (science_jubilee.tools.WebCamera.Labware method) get_show_frame() (science_jubilee.tools.Camera.Camera method) get_well_image() (science_jubilee.tools.Camera.Camera method)

H

has_labware (science_jubilee.decks.Deck.Slot attribute), [1] has_tip (science_jubilee.labware.Labware.Well attribute), [1] (science_jubilee.tools.Camera.Well attribute) (science_jubilee.tools.Loop.Well attribute) (science_jubilee.tools.Pipette.Well attribute) (science_jubilee.tools.PumpDispenser.Well attribute) (science_jubilee.tools.Sonicator.Well attribute) (science_jubilee.tools.Spectrometer.Well attribute) (science_jubilee.tools.Syringe.Well attribute) (science_jubilee.tools.SyringeExtruder.Well attribute) (science_jubilee.tools.WebCamera.Well attribute)

home_all() (science_jubilee.Machine.Machine method), [1] home_e() (science_jubilee.Machine.Machine method), [1] home_in_place() (science_jubilee.Machine.Machine method), [1] home_u() (science_jubilee.Machine.Machine method), [1] home_v() (science_jubilee.Machine.Machine method), [1] home_x() (science_jubilee.Machine.Machine method), [1] home_xyu() (science_jubilee.Machine.Machine method), [1] home_y() (science_jubilee.Machine.Machine method), [1] home_z() (science_jubilee.Machine.Machine method), [1]

I

identifier (science_jubilee.labware.Labware.Column attribute), [1] (science_jubilee.labware.Labware.Row attribute), [1] image_wells() (science_jubilee.tools.Camera.Camera method) integration_time() (science_jubilee.tools.Spectrometer.SpectroscopyTool method) is_tip_rack (science_jubilee.decks.Deck.Labware property) (science_jubilee.labware.Labware.Labware property), [1] (science_jubilee.tools.Pipette.Labware property) (science_jubilee.tools.PumpDispenser.Labware property) (science_jubilee.tools.Sonicator.Labware property) (science_jubilee.tools.Spectrometer.Labware property) (science_jubilee.tools.Syringe.Labware property) (science_jubilee.tools.SyringeExtruder.Labware property) (science_jubilee.tools.WebCamera.Labware property)

L

Labware (class in science_jubilee.decks.Deck) (class in science_jubilee.labware.Labware), [1] (class in science_jubilee.tools.Pipette) (class in science_jubilee.tools.PumpDispenser) (class in science_jubilee.tools.Sonicator) (class in science_jubilee.tools.Spectrometer) (class in science_jubilee.tools.Syringe) (class in science_jubilee.tools.SyringeExtruder) (class in science_jubilee.tools.WebCamera) labware (science_jubilee.decks.Deck.Slot attribute), [1] (science_jubilee.labware.Labware.Location property), [1] (science_jubilee.tools.Pipette.Location property) (science_jubilee.tools.PumpDispenser.Location property) (science_jubilee.tools.Sonicator.Location property) (science_jubilee.tools.Spectrometer.Location property) (science_jubilee.tools.Syringe.Location property) (science_jubilee.tools.SyringeExtruder.Location property) (science_jubilee.tools.WebCamera.Location property) labware_name (science_jubilee.labware.Labware.Well attribute), [1] (science_jubilee.tools.Camera.Well attribute) (science_jubilee.tools.Loop.Well attribute) (science_jubilee.tools.Pipette.Well attribute) (science_jubilee.tools.PumpDispenser.Well attribute) (science_jubilee.tools.Sonicator.Well attribute) (science_jubilee.tools.Spectrometer.Well attribute) (science_jubilee.tools.Syringe.Well attribute) (science_jubilee.tools.SyringeExtruder.Well attribute) (science_jubilee.tools.WebCamera.Well attribute) labware_type (science_jubilee.decks.Deck.Labware property) (science_jubilee.labware.Labware.Labware property), [1] (science_jubilee.tools.Pipette.Labware property) (science_jubilee.tools.PumpDispenser.Labware property) (science_jubilee.tools.Sonicator.Labware property) (science_jubilee.tools.Spectrometer.Labware property) (science_jubilee.tools.Syringe.Labware property) (science_jubilee.tools.SyringeExtruder.Labware property) (science_jubilee.tools.WebCamera.Labware property) lamp_shutter() (science_jubilee.tools.Spectrometer.SpectroscopyTool method)

load_coefficients() (science_jubilee.tools.Camera.Camera method) load_config() (science_jubilee.tools.Syringe.Syringe method), [1] (science_jubilee.tools.SyringeExtruder.SyringeExtruder method), [1] load_deck() (science_jubilee.Machine.Machine method), [1] load_labware() (science_jubilee.decks.Deck.Deck method), [1] (science_jubilee.Machine.Deck method) (science_jubilee.Machine.Machine method), [1] load_manualOffset() (science_jubilee.decks.Deck.Labware method) (science_jubilee.labware.Labware.Labware method), [1] (science_jubilee.tools.Pipette.Labware method) (science_jubilee.tools.PumpDispenser.Labware method) (science_jubilee.tools.Sonicator.Labware method) (science_jubilee.tools.Spectrometer.Labware method) (science_jubilee.tools.Syringe.Labware method) (science_jubilee.tools.SyringeExtruder.Labware method) (science_jubilee.tools.WebCamera.Labware method) load_name (science_jubilee.decks.Deck.Labware property) (science_jubilee.labware.Labware.Labware property), [1] (science_jubilee.tools.Pipette.Labware property) (science_jubilee.tools.PumpDispenser.Labware property) (science_jubilee.tools.Sonicator.Labware property) (science_jubilee.tools.Spectrometer.Labware property) (science_jubilee.tools.Syringe.Labware property) (science_jubilee.tools.SyringeExtruder.Labware property) (science_jubilee.tools.WebCamera.Labware property) load_tool() (science_jubilee.Machine.Machine method), [1] LOCALHOST (science_jubilee.Machine.Machine attribute), [1] Location (class in science_jubilee.labware.Labware), [1] (class in science_jubilee.tools.Pipette) (class in science_jubilee.tools.PumpDispenser) (class in science_jubilee.tools.Sonicator) (class in science_jubilee.tools.Spectrometer) (class in science_jubilee.tools.Syringe) (class in science_jubilee.tools.SyringeExtruder) (class in science_jubilee.tools.WebCamera) logger (in module science_jubilee.tools.Pipette) (in module science_jubilee.tools.Sonicator) Loop (class in science_jubilee.tools.Loop), [1]

M

Machine (class in science_jubilee.Machine), [1] machine_homed() (in module science_jubilee.Machine), [1] MachineConfigurationError, [1] MachineStateError, [1] make_control_panel() (in module CalibrationControlPanel) (in module science_jubilee.calibration.CalibrationControlPanel) make_e() (science_jubilee.tools.SyringeExtruder.SyringeExtruder method), [1] manual_offset() (science_jubilee.decks.Deck.Labware method) (science_jubilee.labware.Labware.Labware method), [1] (science_jubilee.tools.Pipette.Labware method) (science_jubilee.tools.PumpDispenser.Labware method) (science_jubilee.tools.Sonicator.Labware method) (science_jubilee.tools.Spectrometer.Labware method) (science_jubilee.tools.Syringe.Labware method) (science_jubilee.tools.SyringeExtruder.Labware method) (science_jubilee.tools.WebCamera.Labware method) MeasurementManager (class in science_jubilee.tools.Spectrometer) metadata() (science_jubilee.decks.Deck.Labware method) (science_jubilee.labware.Labware.Labware method), [1] (science_jubilee.tools.Pipette.Labware method) (science_jubilee.tools.PumpDispenser.Labware method) (science_jubilee.tools.Sonicator.Labware method) (science_jubilee.tools.Spectrometer.Labware method) (science_jubilee.tools.Syringe.Labware method) (science_jubilee.tools.SyringeExtruder.Labware method) (science_jubilee.tools.WebCamera.Labware method) mix() (science_jubilee.tools.Pipette.Pipette method), [1]

module CalibrationControlPanel science_jubilee, [1] science_jubilee.calibration science_jubilee.calibration.CalibrationControlPanel science_jubilee.decks, [1] science_jubilee.decks.Deck, [1] science_jubilee.decks.Plate, [1] science_jubilee.labware, [1] science_jubilee.labware.Labware, [1] science_jubilee.Machine, [1] science_jubilee.tools, [1] science_jubilee.tools.Camera science_jubilee.tools.Loop, [1] science_jubilee.tools.PeristalticPumps, [1] science_jubilee.tools.Pipette, [1] science_jubilee.tools.piserver, [1] science_jubilee.tools.PumpDispenser, [1] science_jubilee.tools.Sonicator, [1] science_jubilee.tools.Spectrometer science_jubilee.tools.Syringe, [1] science_jubilee.tools.SyringeExtruder, [1] science_jubilee.tools.Tool, [1] science_jubilee.tools.WebCamera, [1] move() (science_jubilee.Machine.Machine method), [1] move_extrude() (science_jubilee.tools.SyringeExtruder.SyringeExtruder method), [1] move_to() (science_jubilee.Machine.Machine method), [1] multiply() (science_jubilee.labware.Labware.Point method), [1]

N

name (science_jubilee.labware.Labware.Well attribute), [1] (science_jubilee.tools.Camera.Well attribute) (science_jubilee.tools.Loop.Well attribute) (science_jubilee.tools.Pipette.Well attribute) (science_jubilee.tools.PumpDispenser.Well attribute) (science_jubilee.tools.Sonicator.Well attribute) (science_jubilee.tools.Spectrometer.Well attribute) (science_jubilee.tools.Syringe.Well attribute) (science_jubilee.tools.SyringeExtruder.Well attribute) (science_jubilee.tools.WebCamera.Well attribute)

next_tip() (science_jubilee.tools.Pipette.TipTracker method), [1]

O

offset (science_jubilee.decks.Deck.Labware property) (science_jubilee.decks.Deck.Slot attribute), [1] (science_jubilee.labware.Labware.Labware property), [1] (science_jubilee.labware.Labware.Well attribute), [1] (science_jubilee.tools.Camera.Well attribute) (science_jubilee.tools.Loop.Well attribute) (science_jubilee.tools.Pipette.Labware property) (science_jubilee.tools.Pipette.Well attribute) (science_jubilee.tools.PumpDispenser.Labware property) (science_jubilee.tools.PumpDispenser.Well attribute) (science_jubilee.tools.Sonicator.Labware property) (science_jubilee.tools.Sonicator.Well attribute) (science_jubilee.tools.Spectrometer.Labware property) (science_jubilee.tools.Spectrometer.Well attribute) (science_jubilee.tools.Syringe.Labware property) (science_jubilee.tools.Syringe.Well attribute) (science_jubilee.tools.SyringeExtruder.Labware property) (science_jubilee.tools.SyringeExtruder.Well attribute) (science_jubilee.tools.WebCamera.Labware property) (science_jubilee.tools.WebCamera.Well attribute)

offsetFrom (science_jubilee.decks.Deck.Deck property), [1] (science_jubilee.Machine.Deck property) ordering (science_jubilee.decks.Deck.Labware property) (science_jubilee.labware.Labware.Labware property), [1] (science_jubilee.tools.Pipette.Labware property) (science_jubilee.tools.PumpDispenser.Labware property) (science_jubilee.tools.Sonicator.Labware property) (science_jubilee.tools.Spectrometer.Labware property) (science_jubilee.tools.Syringe.Labware property) (science_jubilee.tools.SyringeExtruder.Labware property) (science_jubilee.tools.WebCamera.Labware property)

P

parameters() (science_jubilee.decks.Deck.Labware method) (science_jubilee.labware.Labware.Labware method), [1] (science_jubilee.tools.Pipette.Labware method) (science_jubilee.tools.PumpDispenser.Labware method) (science_jubilee.tools.Sonicator.Labware method) (science_jubilee.tools.Spectrometer.Labware method) (science_jubilee.tools.Syringe.Labware method) (science_jubilee.tools.SyringeExtruder.Labware method) (science_jubilee.tools.WebCamera.Labware method) park_tool() (science_jubilee.Machine.Machine method), [1] perform_cleanining_protocol() (science_jubilee.tools.Sonicator.Sonicator method), [1] PeristalticPumps (class in science_jubilee.tools.PeristalticPumps), [1] pickup_tip() (science_jubilee.tools.Pipette.Pipette method), [1] pickup_tool() (science_jubilee.Machine.Machine method), [1] Pipette (class in science_jubilee.tools.Pipette), [1] Plate (class in science_jubilee.decks.Plate), [1] PlateConfigurationError, [1] PlateStateError, [1] Point (class in science_jubilee.labware.Labware), [1] point (science_jubilee.labware.Labware.Location property), [1] (science_jubilee.tools.Pipette.Location property) (science_jubilee.tools.PumpDispenser.Location property) (science_jubilee.tools.Sonicator.Location property) (science_jubilee.tools.Spectrometer.Location property) (science_jubilee.tools.Syringe.Location property) (science_jubilee.tools.SyringeExtruder.Location property) (science_jubilee.tools.WebCamera.Location property)

pop_machine_state() (science_jubilee.Machine.Machine method), [1] position (science_jubilee.Machine.Machine property), [1] post_load() (science_jubilee.Machine.Tool method) (science_jubilee.tools.Camera.Tool method) (science_jubilee.tools.Loop.Tool method) (science_jubilee.tools.PeristalticPumps.PeristalticPumps method), [1] (science_jubilee.tools.PeristalticPumps.Tool method) (science_jubilee.tools.Pipette.Pipette method), [1] (science_jubilee.tools.Pipette.Tool method) (science_jubilee.tools.PumpDispenser.Tool method) (science_jubilee.tools.Sonicator.Tool method) (science_jubilee.tools.Spectrometer.Tool method) (science_jubilee.tools.Syringe.Syringe method), [1] (science_jubilee.tools.Syringe.Tool method) (science_jubilee.tools.SyringeExtruder.SyringeExtruder method), [1] (science_jubilee.tools.SyringeExtruder.Tool method) (science_jubilee.tools.Tool.Tool method), [1] (science_jubilee.tools.WebCamera.Tool method) pretty_print() (science_jubilee.tools.Spectrometer.MeasurementManager method) previous_tip() (science_jubilee.tools.Pipette.TipTracker method), [1] prime() (science_jubilee.tools.Pipette.Pipette method), [1] prime_lines() (science_jubilee.tools.PumpDispenser.PumpDispenser method), [1] process_image() (science_jubilee.tools.WebCamera.Camera method), [1] pump() (science_jubilee.tools.PeristalticPumps.PeristalticPumps method), [1] PumpDispenser (class in science_jubilee.tools.PumpDispenser), [1] push_machine_state() (science_jubilee.Machine.Machine method), [1]

R

read_file() (science_jubilee.tools.Spectrometer.MeasurementManager method) read_from_file() (science_jubilee.tools.Spectrometer.SpectroscopyTool method) reload_tool() (science_jubilee.Machine.Machine method), [1] requires_active_tool() (in module science_jubilee.tools.Camera) (in module science_jubilee.tools.Loop) (in module science_jubilee.tools.Pipette) (in module science_jubilee.tools.Sonicator) (in module science_jubilee.tools.Spectrometer) (in module science_jubilee.tools.Syringe) (in module science_jubilee.tools.SyringeExtruder) (in module science_jubilee.tools.Tool), [1] (in module science_jubilee.tools.WebCamera)

requires_deck() (in module science_jubilee.Machine), [1] requires_safe_z() (in module science_jubilee.Machine), [1] reset() (science_jubilee.Machine.Machine method), [1] return_tip() (science_jubilee.tools.Pipette.Pipette method), [1] (science_jubilee.tools.Pipette.TipTracker method), [1] Row (class in science_jubilee.labware.Labware), [1]

S

safe_z (science_jubilee.decks.Deck.Deck property), [1] (science_jubilee.Machine.Deck property) safe_z_movement() (science_jubilee.Machine.Machine method), [1] save_to_file() (science_jubilee.tools.Spectrometer.SpectroscopyTool method) scale_intensity() (science_jubilee.tools.Spectrometer.SpectroscopyTool static method) scans_to_average() (science_jubilee.tools.Spectrometer.SpectroscopyTool method) science_jubilee module, [1] science_jubilee.calibration module science_jubilee.calibration.CalibrationControlPanel module science_jubilee.decks module, [1] science_jubilee.decks.Deck module, [1] science_jubilee.decks.Plate module, [1] science_jubilee.labware module, [1] science_jubilee.labware.Labware module, [1] science_jubilee.Machine module, [1] science_jubilee.tools module, [1] science_jubilee.tools.Camera module science_jubilee.tools.Loop module, [1] science_jubilee.tools.PeristalticPumps module, [1] science_jubilee.tools.Pipette module, [1] science_jubilee.tools.piserver module, [1] science_jubilee.tools.PumpDispenser module, [1] science_jubilee.tools.Sonicator module, [1] science_jubilee.tools.Spectrometer module science_jubilee.tools.Syringe module, [1] science_jubilee.tools.SyringeExtruder module, [1] science_jubilee.tools.Tool module, [1] science_jubilee.tools.WebCamera module, [1] scratch_fp (in module science_jubilee.tools.piserver) set_clean_tip() (science_jubilee.labware.Labware.Well method), [1] (science_jubilee.tools.Camera.Well method) (science_jubilee.tools.Loop.Well method) (science_jubilee.tools.Pipette.Well method) (science_jubilee.tools.PumpDispenser.Well method) (science_jubilee.tools.Sonicator.Well method) (science_jubilee.tools.Spectrometer.Well method) (science_jubilee.tools.Syringe.Well method) (science_jubilee.tools.SyringeExtruder.Well method) (science_jubilee.tools.WebCamera.Well method)

set_cleaning_protocol() (science_jubilee.tools.Sonicator.Sonicator method), [1] set_has_tip() (science_jubilee.labware.Labware.Well method), [1] (science_jubilee.tools.Camera.Well method) (science_jubilee.tools.Loop.Well method) (science_jubilee.tools.Pipette.Well method) (science_jubilee.tools.PumpDispenser.Well method) (science_jubilee.tools.Sonicator.Well method) (science_jubilee.tools.Spectrometer.Well method) (science_jubilee.tools.Syringe.Well method) (science_jubilee.tools.SyringeExtruder.Well method) (science_jubilee.tools.WebCamera.Well method) set_tool_offset() (science_jubilee.Machine.Machine method), [1] shape (science_jubilee.decks.Deck.Labware property) (science_jubilee.labware.Labware.Labware property), [1] (science_jubilee.labware.Labware.Well attribute), [1] (science_jubilee.tools.Camera.Well attribute) (science_jubilee.tools.Loop.Well attribute) (science_jubilee.tools.Pipette.Labware property) (science_jubilee.tools.Pipette.Well attribute) (science_jubilee.tools.PumpDispenser.Labware property) (science_jubilee.tools.PumpDispenser.Well attribute) (science_jubilee.tools.Sonicator.Labware property) (science_jubilee.tools.Sonicator.Well attribute) (science_jubilee.tools.Spectrometer.Labware property) (science_jubilee.tools.Spectrometer.Well attribute) (science_jubilee.tools.Syringe.Labware property) (science_jubilee.tools.Syringe.Well attribute) (science_jubilee.tools.SyringeExtruder.Labware property) (science_jubilee.tools.SyringeExtruder.Well attribute) (science_jubilee.tools.WebCamera.Labware property) (science_jubilee.tools.WebCamera.Well attribute) show_frame() (science_jubilee.tools.Camera.Camera method) Slot (class in science_jubilee.decks.Deck), [1] slot (science_jubilee.labware.Labware.Well attribute), [1] (science_jubilee.tools.Camera.Well attribute) (science_jubilee.tools.Loop.Well attribute) (science_jubilee.tools.Pipette.Well attribute) (science_jubilee.tools.PumpDispenser.Well attribute) (science_jubilee.tools.Sonicator.Well attribute) (science_jubilee.tools.Spectrometer.Well attribute) (science_jubilee.tools.Syringe.Well attribute) (science_jubilee.tools.SyringeExtruder.Well attribute) (science_jubilee.tools.WebCamera.Well attribute) slot_index (science_jubilee.decks.Deck.Slot attribute), [1] slots (science_jubilee.decks.Deck.SlotSet attribute), [1] SlotSet (class in science_jubilee.decks.Deck), [1] slotType (science_jubilee.decks.Deck.Deck property), [1] (science_jubilee.Machine.Deck property) sonicate_well() (science_jubilee.tools.Sonicator.Sonicator method), [1] Sonicator (class in science_jubilee.tools.Sonicator), [1] SpectroscopyTool (class in science_jubilee.tools.Spectrometer) stir() (science_jubilee.tools.Pipette.Pipette method), [1] substract() (science_jubilee.labware.Labware.Point method), [1] Syringe (class in science_jubilee.tools.Syringe), [1] SyringeExtruder (class in science_jubilee.tools.SyringeExtruder), [1]

T

tip_check() (in module science_jubilee.tools.Pipette), [1] tip_length (science_jubilee.decks.Deck.Labware property) (science_jubilee.labware.Labware.Labware property), [1] (science_jubilee.tools.Pipette.Labware property) (science_jubilee.tools.PumpDispenser.Labware property) (science_jubilee.tools.Sonicator.Labware property) (science_jubilee.tools.Spectrometer.Labware property) (science_jubilee.tools.Syringe.Labware property) (science_jubilee.tools.SyringeExtruder.Labware property) (science_jubilee.tools.WebCamera.Labware property) tip_overlap (science_jubilee.decks.Deck.Labware property) (science_jubilee.labware.Labware.Labware property), [1] (science_jubilee.tools.Pipette.Labware property) (science_jubilee.tools.PumpDispenser.Labware property) (science_jubilee.tools.Sonicator.Labware property) (science_jubilee.tools.Spectrometer.Labware property) (science_jubilee.tools.Syringe.Labware property) (science_jubilee.tools.SyringeExtruder.Labware property) (science_jubilee.tools.WebCamera.Labware property) TipTracker (class in science_jubilee.tools.Pipette), [1] Tool (class in science_jubilee.Machine) (class in science_jubilee.tools.Camera) (class in science_jubilee.tools.Loop) (class in science_jubilee.tools.PeristalticPumps) (class in science_jubilee.tools.Pipette) (class in science_jubilee.tools.PumpDispenser) (class in science_jubilee.tools.Sonicator) (class in science_jubilee.tools.Spectrometer) (class in science_jubilee.tools.Syringe) (class in science_jubilee.tools.SyringeExtruder) (class in science_jubilee.tools.Tool), [1] (class in science_jubilee.tools.WebCamera) tool_lock() (science_jubilee.Machine.Machine method), [1] tool_unlock() (science_jubilee.Machine.Machine method), [1] tool_z_offsets (science_jubilee.Machine.Machine property), [1] ToolConfigurationError, [1], [2], [3], [4]

ToolStateError, [1], [2], [3], [4] top() (science_jubilee.labware.Labware.Well method), [1] (science_jubilee.tools.Camera.Well method) (science_jubilee.tools.Loop.Well method) (science_jubilee.tools.Pipette.Well method) (science_jubilee.tools.PumpDispenser.Well method) (science_jubilee.tools.Sonicator.Well method) (science_jubilee.tools.Spectrometer.Well method) (science_jubilee.tools.Syringe.Well method) (science_jubilee.tools.SyringeExtruder.Well method) (science_jubilee.tools.WebCamera.Well method) top_ (science_jubilee.labware.Labware.Well property), [1] (science_jubilee.tools.Camera.Well property) (science_jubilee.tools.Loop.Well property) (science_jubilee.tools.Pipette.Well property) (science_jubilee.tools.PumpDispenser.Well property) (science_jubilee.tools.Sonicator.Well property) (science_jubilee.tools.Spectrometer.Well property) (science_jubilee.tools.Syringe.Well property) (science_jubilee.tools.SyringeExtruder.Well property) (science_jubilee.tools.WebCamera.Well property) totalLiquidVolume (science_jubilee.labware.Labware.Well attribute), [1] (science_jubilee.tools.Camera.Well attribute) (science_jubilee.tools.Loop.Well attribute) (science_jubilee.tools.Pipette.Well attribute) (science_jubilee.tools.PumpDispenser.Well attribute) (science_jubilee.tools.Sonicator.Well attribute) (science_jubilee.tools.Spectrometer.Well attribute) (science_jubilee.tools.Syringe.Well attribute) (science_jubilee.tools.SyringeExtruder.Well attribute) (science_jubilee.tools.WebCamera.Well attribute) totalslots (science_jubilee.decks.Deck.Deck property), [1] (science_jubilee.Machine.Deck property) transfer() (science_jubilee.tools.Loop.Loop method), [1] (science_jubilee.tools.Pipette.Pipette method), [1] (science_jubilee.tools.Syringe.Syringe method), [1]

U

update_z_offset() (science_jubilee.tools.Pipette.Pipette method), [1]

use_tip() (science_jubilee.tools.Pipette.TipTracker method), [1]

V

video_feed() (science_jubilee.tools.WebCamera.Camera method), [1] video_stream() (science_jubilee.tools.Camera.Camera method) view_image() (science_jubilee.tools.WebCamera.Camera method), [1] vol2move() (science_jubilee.tools.Pipette.Pipette method), [1] volume_units (science_jubilee.decks.Deck.Labware property) (science_jubilee.labware.Labware.Labware property), [1] (science_jubilee.tools.Pipette.Labware property) (science_jubilee.tools.PumpDispenser.Labware property) (science_jubilee.tools.Sonicator.Labware property) (science_jubilee.tools.Spectrometer.Labware property) (science_jubilee.tools.Syringe.Labware property) (science_jubilee.tools.SyringeExtruder.Labware property) (science_jubilee.tools.WebCamera.Labware property)

W

wavelengths (science_jubilee.tools.Spectrometer.SpectroscopyTool property) Well (class in science_jubilee.labware.Labware), [1] (class in science_jubilee.tools.Camera) (class in science_jubilee.tools.Loop) (class in science_jubilee.tools.Pipette) (class in science_jubilee.tools.PumpDispenser) (class in science_jubilee.tools.Sonicator) (class in science_jubilee.tools.Spectrometer) (class in science_jubilee.tools.Syringe) (class in science_jubilee.tools.SyringeExtruder) (class in science_jubilee.tools.WebCamera) wells (science_jubilee.labware.Labware.WellSet attribute), [1]

WellSet (class in science_jubilee.labware.Labware), [1] wipe_nozzle() (science_jubilee.tools.SyringeExtruder.SyringeExtruder method), [1] wipe_tower() (science_jubilee.tools.SyringeExtruder.SyringeExtruder method), [1] withWellOrder() (science_jubilee.decks.Deck.Labware method) (science_jubilee.labware.Labware.Labware method), [1] (science_jubilee.tools.Pipette.Labware method) (science_jubilee.tools.PumpDispenser.Labware method) (science_jubilee.tools.Sonicator.Labware method) (science_jubilee.tools.Spectrometer.Labware method) (science_jubilee.tools.Syringe.Labware method) (science_jubilee.tools.SyringeExtruder.Labware method) (science_jubilee.tools.WebCamera.Labware method)

X

x (science_jubilee.labware.Labware.Point attribute), [1] (science_jubilee.labware.Labware.Well attribute) (science_jubilee.labware.Labware.Well property), [1] (science_jubilee.tools.Camera.Well attribute) (science_jubilee.tools.Camera.Well property) (science_jubilee.tools.Loop.Well attribute) (science_jubilee.tools.Loop.Well property) (science_jubilee.tools.Pipette.Well attribute) (science_jubilee.tools.Pipette.Well property) (science_jubilee.tools.PumpDispenser.Well attribute) (science_jubilee.tools.PumpDispenser.Well property) (science_jubilee.tools.Sonicator.Well attribute) (science_jubilee.tools.Sonicator.Well property) (science_jubilee.tools.Spectrometer.Well attribute) (science_jubilee.tools.Spectrometer.Well property) (science_jubilee.tools.Syringe.Well attribute) (science_jubilee.tools.Syringe.Well property) (science_jubilee.tools.SyringeExtruder.Well attribute) (science_jubilee.tools.SyringeExtruder.Well property) (science_jubilee.tools.WebCamera.Well attribute) (science_jubilee.tools.WebCamera.Well property)

xDimension (science_jubilee.labware.Labware.Well attribute), [1] (science_jubilee.tools.Camera.Well attribute) (science_jubilee.tools.Loop.Well attribute) (science_jubilee.tools.Pipette.Well attribute) (science_jubilee.tools.PumpDispenser.Well attribute) (science_jubilee.tools.Sonicator.Well attribute) (science_jubilee.tools.Spectrometer.Well attribute) (science_jubilee.tools.Syringe.Well attribute) (science_jubilee.tools.SyringeExtruder.Well attribute) (science_jubilee.tools.WebCamera.Well attribute)

Y

y (science_jubilee.labware.Labware.Point attribute), [1] (science_jubilee.labware.Labware.Well attribute) (science_jubilee.labware.Labware.Well property), [1] (science_jubilee.tools.Camera.Well attribute) (science_jubilee.tools.Camera.Well property) (science_jubilee.tools.Loop.Well attribute) (science_jubilee.tools.Loop.Well property) (science_jubilee.tools.Pipette.Well attribute) (science_jubilee.tools.Pipette.Well property) (science_jubilee.tools.PumpDispenser.Well attribute) (science_jubilee.tools.PumpDispenser.Well property) (science_jubilee.tools.Sonicator.Well attribute) (science_jubilee.tools.Sonicator.Well property) (science_jubilee.tools.Spectrometer.Well attribute) (science_jubilee.tools.Spectrometer.Well property) (science_jubilee.tools.Syringe.Well attribute) (science_jubilee.tools.Syringe.Well property) (science_jubilee.tools.SyringeExtruder.Well attribute) (science_jubilee.tools.SyringeExtruder.Well property) (science_jubilee.tools.WebCamera.Well attribute) (science_jubilee.tools.WebCamera.Well property)

yDimension (science_jubilee.labware.Labware.Well attribute), [1] (science_jubilee.tools.Camera.Well attribute) (science_jubilee.tools.Loop.Well attribute) (science_jubilee.tools.Pipette.Well attribute) (science_jubilee.tools.PumpDispenser.Well attribute) (science_jubilee.tools.Sonicator.Well attribute) (science_jubilee.tools.Spectrometer.Well attribute) (science_jubilee.tools.Syringe.Well attribute) (science_jubilee.tools.SyringeExtruder.Well attribute) (science_jubilee.tools.WebCamera.Well attribute)

Z

z (science_jubilee.labware.Labware.Point attribute), [1] (science_jubilee.labware.Labware.Well attribute) (science_jubilee.labware.Labware.Well property), [1] (science_jubilee.tools.Camera.Well attribute) (science_jubilee.tools.Camera.Well property) (science_jubilee.tools.Loop.Well attribute) (science_jubilee.tools.Loop.Well property) (science_jubilee.tools.Pipette.Well attribute) (science_jubilee.tools.Pipette.Well property) (science_jubilee.tools.PumpDispenser.Well attribute) (science_jubilee.tools.PumpDispenser.Well property) (science_jubilee.tools.Sonicator.Well attribute) (science_jubilee.tools.Sonicator.Well property) (science_jubilee.tools.Spectrometer.Well attribute) (science_jubilee.tools.Spectrometer.Well property) (science_jubilee.tools.Syringe.Well attribute) (science_jubilee.tools.Syringe.Well property) (science_jubilee.tools.SyringeExtruder.Well attribute) (science_jubilee.tools.SyringeExtruder.Well property) (science_jubilee.tools.WebCamera.Well attribute) (science_jubilee.tools.WebCamera.Well property)