Index

_

__enter__() (science_jubilee.Machine.Machine method) __eq__() (Labware-checkpoint.Location method) (science_jubilee.labware.Labware.Location method) __exit__() (science_jubilee.Machine.Machine method) __getitem__() (Labware-checkpoint.WellSet method) (science_jubilee.decks.Deck.SlotSet method) (science_jubilee.labware.Labware.WellSet method) __init__-checkpoint module __iter__() (Labware-checkpoint.Location method) (science_jubilee.labware.Labware.Location method) __repr__() (Labware-checkpoint.Labware method) (Labware-checkpoint.Location method) (Labware-checkpoint.Point method) (Labware-checkpoint.Well method) (Labware-checkpoint.WellSet method) (science_jubilee.decks.Deck.SlotSet method) (science_jubilee.labware.Labware.Labware method) (science_jubilee.labware.Labware.Location method) (science_jubilee.labware.Labware.Point method) (science_jubilee.labware.Labware.Well method) (science_jubilee.labware.Labware.WellSet method) _absolute_extrusion (science_jubilee.Machine.Machine attribute) _absolute_positioning (science_jubilee.Machine.Machine attribute) _active_tool_index (science_jubilee.Machine.Machine attribute) _api_version (science_jubilee.tools.Spectrometer.SpectroscopyTool property) _aspirate() (Pipette-checkpoint.Pipette method) (science_jubilee.tools.HTTPSyringe.HTTPSyringe method) (science_jubilee.tools.Pipette.Pipette method) (science_jubilee.tools.Syringe.Syringe method) (science_jubilee.tools.SyringeExtruder.SyringeExtruder method) _available_clean_tips (Pipette-checkpoint.TipTracker attribute) (science_jubilee.tools.Pipette.TipTracker attribute) _axis_limits (science_jubilee.Machine.Machine attribute) _camera_matrix (science_jubilee.tools.Camera.Camera attribute) _capture_image() (science_jubilee.tools.WebCamera.Camera method) _collect_raw_spectrum() (science_jubilee.tools.Spectrometer.SpectroscopyTool method) _configured_axes (science_jubilee.Machine.Machine attribute) _configured_tools (science_jubilee.Machine.Machine attribute) _create_rows_and_columns() (Labware-checkpoint.Labware method) (science_jubilee.labware.Labware.Labware method) _create_volume_list() (Pipette-checkpoint.Pipette method) (science_jubilee.tools.Pipette.Pipette method) _dark_spectrum (science_jubilee.tools.Spectrometer.SpectroscopyTool attribute) _device_id (science_jubilee.tools.Spectrometer.SpectroscopyTool property) _dispense() (Pipette-checkpoint.Pipette method) (science_jubilee.tools.HTTPSyringe.HTTPSyringe method) (science_jubilee.tools.Pipette.Pipette method) (science_jubilee.tools.Syringe.Syringe method) (science_jubilee.tools.SyringeExtruder.SyringeExtruder method) _dist_matrix (science_jubilee.tools.Camera.Camera attribute) _drop_tip() (Pipette-checkpoint.Pipette method) (science_jubilee.tools.Pipette.Pipette method)

_expand_for_volume_contraints() (Pipette-checkpoint.Pipette static method) (science_jubilee.tools.Pipette.Pipette static method) _extend_source_target_lists() (Pipette-checkpoint.Pipette static method) (science_jubilee.tools.Pipette.Pipette static method) _get_rgb_avg() (science_jubilee.tools.WebCamera.Camera method) _get_slots() (science_jubilee.decks.Deck.Deck method) _get_tool_index() (science_jubilee.Machine.Machine method) _get_top_bottom() (science_jubilee.tools.Camera.Camera static method) (science_jubilee.tools.Loop.Loop static method) _get_xyz() (science_jubilee.tools.Camera.Camera static method) (science_jubilee.tools.Loop.Loop static method) _getxyz() (Labware-checkpoint.Labware static method) (science_jubilee.labware.Labware.Labware static method) _integration_time (science_jubilee.tools.Spectrometer.SpectroscopyTool property) _labware (Labware-checkpoint.Location attribute) (science_jubilee.labware.Labware.Location attribute) _load_sample() (science_jubilee.tools.PneumaticSampleLoader.PneumaticSampleLoader method) _machine (science_jubilee.decks.Plate.Plate attribute) (science_jubilee.tools.Tool.Tool attribute) _mask_image() (science_jubilee.tools.WebCamera.Camera method) _model (science_jubilee.tools.Spectrometer.SpectroscopyTool property) _move_xyzev() (science_jubilee.Machine.Machine method) _name (science_jubilee.decks.Plate.Plate attribute) _nominal_coordinates() (Labware-checkpoint.Labware static method) (science_jubilee.labware.Labware.Labware static method) _open_device() (science_jubilee.tools.Spectrometer.SpectroscopyTool method) _pickup_tip() (Pipette-checkpoint.Pipette method) (science_jubilee.tools.Pipette.Pipette method) _point (Labware-checkpoint.Location attribute) (science_jubilee.labware.Labware.Location attribute) _prepare_load() (science_jubilee.tools.PneumaticSampleLoader.PneumaticSampleLoader method) _raspberrypi_hat() (science_jubilee.tools.Sonicator.Sonicator method) _raspberrypi_pico() (science_jubilee.tools.Sonicator.Sonicator method) _rinse_cell() (science_jubilee.tools.PneumaticSampleLoader.PneumaticSampleLoader method) _safe_position() (science_jubilee.tools.PneumaticSampleLoader.PneumaticSampleLoader method) _safe_z (science_jubilee.decks.Deck.Deck attribute) _serial_number (science_jubilee.tools.Spectrometer.SpectroscopyTool property) _set_absolute_extrusion() (science_jubilee.Machine.Machine method) _set_absolute_positioning() (science_jubilee.Machine.Machine method) _set_relative_extrusion() (science_jubilee.Machine.Machine method) _set_relative_positioning() (science_jubilee.Machine.Machine method) _set_sonication_power() (science_jubilee.tools.Sonicator.Sonicator method) _sonicate() (science_jubilee.tools.Sonicator.Sonicator method) _sonication_off() (science_jubilee.tools.Sonicator.Sonicator method) _sonication_on() (science_jubilee.tools.Sonicator.Sonicator method) _take_spectrum() (science_jubilee.tools.Spectrometer.SpectroscopyTool method) _tip_stock_mapping (Pipette-checkpoint.TipTracker attribute) (science_jubilee.tools.Pipette.TipTracker attribute) _tool_z_offsets (science_jubilee.Machine.Machine attribute) _translate_point() (Labware-checkpoint.Labware method) (science_jubilee.labware.Labware.Labware method) _usb_device (science_jubilee.tools.Spectrometer.SpectroscopyTool property) _wells (Pipette-checkpoint.TipTracker attribute) (science_jubilee.tools.Pipette.TipTracker attribute)

A

absolute() (Labware-checkpoint.Point method) (science_jubilee.labware.Labware.Point method), [1] active_tool_index (science_jubilee.Machine.Machine property), [1] add() (Labware-checkpoint.Point method) (science_jubilee.labware.Labware.Point method), [1] add_slot() (Labware-checkpoint.Labware method) (science_jubilee.labware.Labware.Labware method), [1] add_tiprack() (Pipette-checkpoint.Pipette method) (science_jubilee.tools.Pipette.Pipette method), [1] add_waste() (science_jubilee.tools.PumpDispenser.PumpDispenser method), [1] address (science_jubilee.Machine.Machine attribute) air_gap() (Pipette-checkpoint.Pipette method) (science_jubilee.tools.Pipette.Pipette method), [1]

apply_offset() (Labware-checkpoint.Well method) (science_jubilee.labware.Labware.Well method), [1] arm_down_delay (science_jubilee.tools.PneumaticSampleLoader.PneumaticSampleLoader attribute) AS7341 (class in science_jubilee.tools.AS7341), [1] aspirate() (Pipette-checkpoint.Pipette method) (science_jubilee.tools.HTTPSyringe.HTTPSyringe method), [1] (science_jubilee.tools.Pipette.Pipette method), [1] (science_jubilee.tools.Syringe.Syringe method), [1] (science_jubilee.tools.SyringeExtruder.SyringeExtruder method), [1] assign_tip_to_stock() (Pipette-checkpoint.TipTracker method) (science_jubilee.tools.Pipette.TipTracker method), [1] axes_homed (science_jubilee.Machine.Machine attribute) axis_limits (science_jubilee.Machine.Machine property), [1]

B

baudrate (science_jubilee.Machine.Machine attribute) (science_jubilee.tools.AS7341.AS7341 attribute) bedType (science_jubilee.decks.Deck.Deck property), [1] blink() (science_jubilee.tools.AS7341.AS7341 method), [1] blowout() (Pipette-checkpoint.Pipette method) (science_jubilee.tools.Pipette.Pipette method), [1]

bottom() (Labware-checkpoint.Well method) (science_jubilee.labware.Labware.Well method), [1] bottom_ (Labware-checkpoint.Well property) (science_jubilee.labware.Labware.Well property), [1] boxcar_width() (science_jubilee.tools.Spectrometer.SpectroscopyTool method) brand (Labware-checkpoint.Labware property) (science_jubilee.labware.Labware.Labware property), [1]

C

CalibrationControlPanel module CalibrationControlPanel-checkpoint module Camera (class in science_jubilee.tools.Camera) (class in science_jubilee.tools.WebCamera), [1] capture_image() (science_jubilee.tools.WebCamera.Camera method), [1] cell_location (science_jubilee.tools.PneumaticSampleLoader.PneumaticSampleLoader attribute) check_bounds() (science_jubilee.tools.Syringe.Syringe method), [1] (science_jubilee.tools.SyringeExtruder.SyringeExtruder method), [1] clean_tip (Labware-checkpoint.Well attribute) (science_jubilee.labware.Labware.Well attribute), [1] collect_spectrum() (science_jubilee.tools.Spectrometer.SpectroscopyTool method) Column (class in Labware-checkpoint) (class in science_jubilee.labware.Labware), [1]

command_ws (science_jubilee.Machine.Machine attribute) config_path (Labware-checkpoint.Labware attribute) (science_jubilee.labware.Labware.Labware attribute) configured_axes (science_jubilee.Machine.Machine property), [1] configured_tools (science_jubilee.Machine.Machine property), [1] connect() (science_jubilee.Machine.Machine method), [1] connect_seeed() (science_jubilee.tools.AS7341.AS7341 method), [1] connection (science_jubilee.tools.Spectrometer.SpectroscopyTool attribute) crash_detection (science_jubilee.Machine.Machine attribute) crash_handler (science_jubilee.Machine.Machine attribute) create_app() (in module science_jubilee.tools.piserver), [1] current_well (Pipette-checkpoint.Pipette attribute) (science_jubilee.Machine.Machine attribute) (science_jubilee.tools.Pipette.Pipette attribute) (science_jubilee.tools.Spectrometer.SpectroscopyTool attribute)

D

dark_spectrum() (science_jubilee.tools.Spectrometer.SpectroscopyTool method) Deck (class in science_jubilee.decks.Deck), [1] deck (science_jubilee.Machine.Machine attribute) deck_config (science_jubilee.decks.Deck.Deck attribute) deck_material (science_jubilee.decks.Deck.Deck property), [1] decode_image() (science_jubilee.tools.WebCamera.Camera method), [1] delay_time() (science_jubilee.Machine.Machine method), [1] depth (Labware-checkpoint.Well attribute) (science_jubilee.labware.Labware.Well attribute), [1] diameter (Labware-checkpoint.Well attribute) (science_jubilee.labware.Labware.Well attribute), [1] dimensions (Labware-checkpoint.Labware property) (science_jubilee.labware.Labware.Labware property), [1] disconnect() (science_jubilee.Machine.Machine method), [1]

disconnect_seeed() (science_jubilee.tools.AS7341.AS7341 method), [1] dispense() (Pipette-checkpoint.Pipette method) (science_jubilee.tools.HTTPSyringe.HTTPSyringe method), [1] (science_jubilee.tools.Pipette.Pipette method), [1] (science_jubilee.tools.PumpDispenser.PumpDispenser method), [1] (science_jubilee.tools.Syringe.Syringe method), [1] (science_jubilee.tools.SyringeExtruder.SyringeExtruder method), [1] display_name (Labware-checkpoint.Labware property) (science_jubilee.labware.Labware.Labware property), [1] dist() (science_jubilee.tools.SyringeExtruder.SyringeExtruder method), [1] dist_name (in module science_jubilee) download_file() (science_jubilee.Machine.Machine method), [1] drop_tip() (Pipette-checkpoint.Pipette method) (science_jubilee.tools.Pipette.Pipette method), [1] dwell() (science_jubilee.Machine.Machine method), [1]

E

e_drive (science_jubilee.tools.Syringe.Syringe attribute) (science_jubilee.tools.SyringeExtruder.SyringeExtruder attribute)

empty_lines() (science_jubilee.tools.PumpDispenser.PumpDispenser method), [1] enqueue() (science_jubilee.tools.PneumaticSampleLoader.PneumaticSampleLoader method), [1] extrude_syringe() (science_jubilee.tools.Syringe.Syringe method), [1]

F

find_seeed() (science_jubilee.tools.AS7341.AS7341 method), [1] from_config() (Pipette-checkpoint.Pipette class method) (science_jubilee.tools.HTTPSyringe.HTTPSyringe class method), [1] (science_jubilee.tools.PeristalticPumps.PeristalticPumps class method), [1] (science_jubilee.tools.Pipette.Pipette class method), [1] (science_jubilee.tools.PneumaticSampleLoader.PneumaticSampleLoader class method), [1] (science_jubilee.tools.PumpDispenser.PumpDispenser class method), [1] (science_jubilee.tools.WebCamera.Camera class method), [1]

G

gcode() (science_jubilee.Machine.Machine method), [1] generate_file() (science_jubilee.tools.Spectrometer.MeasurementManager method) get_camera_indices() (science_jubilee.tools.Camera.Camera method) get_cell_state() (science_jubilee.tools.PneumaticSampleLoader.PneumaticSampleLoader method), [1] get_column() (Labware-checkpoint.Labware method) (science_jubilee.labware.Labware.Labware method), [1] get_frame() (science_jubilee.tools.Camera.Camera method) get_position() (science_jubilee.Machine.Machine method), [1]

get_raw_spectrum() (science_jubilee.tools.AS7341.AS7341 method), [1] get_root_dir() (in module science_jubilee.Machine), [1] (science_jubilee.decks.Plate.Plate method), [1] get_row() (Labware-checkpoint.Labware method) (science_jubilee.labware.Labware.Labware method), [1] get_safety_state() (science_jubilee.tools.PneumaticSampleLoader.PneumaticSampleLoader method), [1] get_show_frame() (science_jubilee.tools.Camera.Camera method) get_well_image() (science_jubilee.tools.Camera.Camera method)

H

handle_crash() (Handlers.SlackInputHandler method) (science_jubilee.utils.Handlers.SlackInputHandler method) Handlers module has_labware (science_jubilee.decks.Deck.Slot attribute), [1] has_tip (Labware-checkpoint.Well attribute) (Pipette-checkpoint.Pipette attribute) (science_jubilee.labware.Labware.Well attribute), [1] (science_jubilee.tools.Pipette.Pipette attribute)

home_all() (science_jubilee.Machine.Machine method), [1] home_e() (science_jubilee.Machine.Machine method), [1] home_in_place() (science_jubilee.Machine.Machine method), [1] home_u() (science_jubilee.Machine.Machine method), [1] home_v() (science_jubilee.Machine.Machine method), [1] home_x() (science_jubilee.Machine.Machine method), [1] home_xyu() (science_jubilee.Machine.Machine method), [1] home_y() (science_jubilee.Machine.Machine method), [1] home_z() (science_jubilee.Machine.Machine method), [1] HTTPSyringe (class in science_jubilee.tools.HTTPSyringe), [1]

I

identifier (Labware-checkpoint.Column attribute) (Labware-checkpoint.Row attribute) (science_jubilee.labware.Labware.Column attribute), [1] (science_jubilee.labware.Labware.Row attribute), [1] image_wells() (science_jubilee.tools.Camera.Camera method) index (science_jubilee.tools.HTTPSyringe.HTTPSyringe attribute) (science_jubilee.tools.PneumaticSampleLoader.PneumaticSampleLoader attribute) (science_jubilee.tools.Spectrometer.SpectroscopyTool attribute) (science_jubilee.tools.Tool.Tool attribute)

input_hold() (Handlers.SlackInputHandler method) (science_jubilee.utils.Handlers.SlackInputHandler method) integration_time() (science_jubilee.tools.Spectrometer.SpectroscopyTool method) intensities (science_jubilee.tools.Spectrometer.MeasurementManager attribute) interface_mode (science_jubilee.tools.Sonicator.Sonicator attribute) is_active_tool (science_jubilee.tools.Tool.Tool attribute) is_primed (Pipette-checkpoint.Pipette attribute) (science_jubilee.tools.Pipette.Pipette attribute) is_tip_rack (Labware-checkpoint.Labware property) (science_jubilee.labware.Labware.Labware property), [1]

L

Labware (class in Labware-checkpoint) (class in science_jubilee.labware.Labware), [1] labware (Labware-checkpoint.Location property) (science_jubilee.decks.Deck.Slot attribute), [1] (science_jubilee.labware.Labware.Location property), [1] Labware-checkpoint module labware_name (Labware-checkpoint.Well attribute) (science_jubilee.labware.Labware.Well attribute), [1] labware_type (Labware-checkpoint.Labware property) (science_jubilee.labware.Labware.Labware property), [1] lamp_shutter() (science_jubilee.tools.Spectrometer.SpectroscopyTool method) line_volume (science_jubilee.tools.PumpDispenser.PumpDispenser attribute) lineEnding (science_jubilee.Machine.Machine attribute) (science_jubilee.tools.AS7341.AS7341 attribute) list_labware_definitions() (science_jubilee.labware.Labware.Labware static method), [1] load_coefficients() (science_jubilee.tools.Camera.Camera method) load_config() (science_jubilee.tools.AS7341.AS7341 method), [1] (science_jubilee.tools.Syringe.Syringe method), [1] (science_jubilee.tools.SyringeExtruder.SyringeExtruder method), [1]

load_deck() (science_jubilee.Machine.Machine method), [1] load_labware() (science_jubilee.decks.Deck.Deck method), [1] (science_jubilee.Machine.Machine method), [1] load_manualOffset() (Labware-checkpoint.Labware method) (science_jubilee.labware.Labware.Labware method), [1] load_name (Labware-checkpoint.Labware property) (science_jubilee.labware.Labware.Labware property), [1] load_sample() (science_jubilee.tools.PneumaticSampleLoader.PneumaticSampleLoader method), [1] load_syringe() (science_jubilee.tools.HTTPSyringe.HTTPSyringe method), [1] load_tool() (science_jubilee.Machine.Machine method), [1] LOCALHOST (science_jubilee.Machine.Machine attribute), [1] Location (class in Labware-checkpoint) (class in science_jubilee.labware.Labware), [1] logger (in module Pipette-checkpoint) (in module science_jubilee.Machine) (in module science_jubilee.tools.Pipette) (in module science_jubilee.tools.Sonicator) login() (science_jubilee.tools.PneumaticSampleLoader.PneumaticSampleLoader method), [1] Loop (class in science_jubilee.tools.Loop), [1]

M

Machine (class in science_jubilee.Machine), [1] machine_homed() (in module science_jubilee.Machine), [1] machine_name (Handlers.SlackInputHandler attribute) MachineConfigurationError, [1] MachineStateError, [1] make_control_panel() (in module CalibrationControlPanel) (in module CalibrationControlPanel-checkpoint) (in module science_jubilee.calibration.CalibrationControlPanel) make_e() (science_jubilee.tools.SyringeExtruder.SyringeExtruder method), [1] manual_offset() (Labware-checkpoint.Labware method) (science_jubilee.labware.Labware.Labware method), [1] max_range (science_jubilee.tools.Syringe.Syringe attribute) (science_jubilee.tools.SyringeExtruder.SyringeExtruder attribute) measure_spectrum() (science_jubilee.tools.AS7341.AS7341 method), [1] MeasurementManager (class in science_jubilee.tools.Spectrometer) metadata (science_jubilee.tools.Spectrometer.MeasurementManager attribute) metadata() (Labware-checkpoint.Labware method) (science_jubilee.labware.Labware.Labware method), [1] min_range (science_jubilee.tools.Syringe.Syringe attribute) (science_jubilee.tools.SyringeExtruder.SyringeExtruder attribute) mix() (Pipette-checkpoint.Pipette method) (science_jubilee.tools.HTTPSyringe.HTTPSyringe method), [1] (science_jubilee.tools.Pipette.Pipette method), [1] (science_jubilee.tools.Syringe.Syringe method), [1] mm_to_ml (science_jubilee.tools.Syringe.Syringe attribute) (science_jubilee.tools.SyringeExtruder.SyringeExtruder attribute) model_update_timestamp (science_jubilee.Machine.Machine attribute) module __init__-checkpoint CalibrationControlPanel CalibrationControlPanel-checkpoint Handlers Labware-checkpoint Pipette-checkpoint science_jubilee, [1] science_jubilee.calibration science_jubilee.calibration.CalibrationControlPanel science_jubilee.decks, [1] science_jubilee.decks.Deck, [1] science_jubilee.decks.Plate, [1] science_jubilee.labware, [1] science_jubilee.labware.Labware, [1] science_jubilee.Machine, [1] science_jubilee.tools, [1] science_jubilee.tools.AS7341, [1] science_jubilee.tools.Camera science_jubilee.tools.HTTPSyringe, [1] science_jubilee.tools.Loop, [1] science_jubilee.tools.PeristalticPumps, [1] science_jubilee.tools.Pipette, [1] science_jubilee.tools.piserver, [1] science_jubilee.tools.PneumaticSampleLoader, [1] science_jubilee.tools.PumpDispenser, [1] science_jubilee.tools.Sonicator, [1] science_jubilee.tools.Spectrometer science_jubilee.tools.Syringe, [1] science_jubilee.tools.SyringeExtruder, [1] science_jubilee.tools.Tool, [1] science_jubilee.tools.WebCamera, [1] science_jubilee.utils science_jubilee.utils.Handlers

move() (science_jubilee.Machine.Machine method), [1] move_extrude() (science_jubilee.tools.SyringeExtruder.SyringeExtruder method), [1] move_to() (science_jubilee.Machine.Machine method), [1] multiply() (Labware-checkpoint.Point method) (science_jubilee.labware.Labware.Point method), [1]

N

n_dispense_heads (science_jubilee.tools.PumpDispenser.PumpDispenser attribute) n_pumps (science_jubilee.tools.PeristalticPumps.PeristalticPumps attribute) name (Labware-checkpoint.Well attribute) (science_jubilee.labware.Labware.Well attribute), [1] (science_jubilee.tools.HTTPSyringe.HTTPSyringe attribute) (science_jubilee.tools.PeristalticPumps.PeristalticPumps attribute) (science_jubilee.tools.PneumaticSampleLoader.PneumaticSampleLoader attribute) (science_jubilee.tools.Spectrometer.SpectroscopyTool attribute) (science_jubilee.tools.Tool.Tool attribute)

next_tip() (Pipette-checkpoint.TipTracker method) (science_jubilee.tools.Pipette.TipTracker method), [1] notify (Handlers.SlackInputHandler attribute) nozzle_diameter (science_jubilee.tools.SyringeExtruder.SyringeExtruder attribute)

O

offset (Labware-checkpoint.Labware property) (Labware-checkpoint.Well attribute) (science_jubilee.decks.Deck.Slot attribute), [1] (science_jubilee.labware.Labware.Labware property), [1] (science_jubilee.labware.Labware.Well attribute), [1]

offsetFrom (science_jubilee.decks.Deck.Deck property), [1] ordering (Labware-checkpoint.Labware property) (science_jubilee.labware.Labware.Labware property), [1]

P

parameters() (Labware-checkpoint.Labware method) (science_jubilee.labware.Labware.Labware method), [1] park_tool() (science_jubilee.Machine.Machine method), [1] parse_state() (science_jubilee.tools.PneumaticSampleLoader.PneumaticSampleLoader method), [1] password (science_jubilee.tools.PneumaticSampleLoader.PneumaticSampleLoader attribute) pause_queue() (science_jubilee.tools.PneumaticSampleLoader.PneumaticSampleLoader method), [1] perform_cleanining_protocol() (science_jubilee.tools.Sonicator.Sonicator method), [1] PeristalticPumps (class in science_jubilee.tools.PeristalticPumps), [1] pickup_tip() (Pipette-checkpoint.Pipette method) (science_jubilee.tools.Pipette.Pipette method), [1] pickup_tool() (science_jubilee.Machine.Machine method), [1] Pipette (class in Pipette-checkpoint) (class in science_jubilee.tools.Pipette), [1] Pipette-checkpoint module Plate (class in science_jubilee.decks.Plate), [1] PlateConfigurationError, [1] PlateStateError, [1] PneumaticSampleLoader (class in science_jubilee.tools.PneumaticSampleLoader), [1] Point (class in Labware-checkpoint) (class in science_jubilee.labware.Labware), [1] point (Labware-checkpoint.Location property) (science_jubilee.labware.Labware.Location property), [1]

pop_machine_state() (science_jubilee.Machine.Machine method), [1] port (science_jubilee.Machine.Machine attribute) (science_jubilee.tools.PneumaticSampleLoader.PneumaticSampleLoader attribute) position (science_jubilee.Machine.Machine property), [1] post_load() (Pipette-checkpoint.Pipette method) (science_jubilee.tools.PeristalticPumps.PeristalticPumps method), [1] (science_jubilee.tools.Pipette.Pipette method), [1] (science_jubilee.tools.Syringe.Syringe method), [1] (science_jubilee.tools.SyringeExtruder.SyringeExtruder method), [1] (science_jubilee.tools.Tool.Tool method), [1] prepare_cell() (science_jubilee.tools.PneumaticSampleLoader.PneumaticSampleLoader method), [1] pretty_print() (science_jubilee.tools.Spectrometer.MeasurementManager method) previous_tip() (Pipette-checkpoint.TipTracker method) (science_jubilee.tools.Pipette.TipTracker method), [1] prime() (Pipette-checkpoint.Pipette method) (science_jubilee.tools.Pipette.Pipette method), [1] prime_lines() (science_jubilee.tools.PumpDispenser.PumpDispenser method), [1] process_image() (science_jubilee.tools.WebCamera.Camera method), [1] pump() (science_jubilee.tools.PeristalticPumps.PeristalticPumps method), [1] PumpDispenser (class in science_jubilee.tools.PumpDispenser), [1] push_machine_state() (science_jubilee.Machine.Machine method), [1]

R

raw_data (science_jubilee.tools.Spectrometer.MeasurementManager attribute) read_file() (science_jubilee.tools.Spectrometer.MeasurementManager method) read_from_file() (science_jubilee.tools.Spectrometer.SpectroscopyTool method) reference_spectrum (science_jubilee.tools.Spectrometer.SpectroscopyTool attribute) reload_tool() (science_jubilee.Machine.Machine method), [1] remaining_volume (science_jubilee.tools.HTTPSyringe.HTTPSyringe attribute) requires_active_tool() (in module science_jubilee.tools.Tool), [1] requires_deck() (in module science_jubilee.Machine), [1] requires_safe_z() (in module science_jubilee.Machine), [1]

reset() (science_jubilee.Machine.Machine method), [1] retract_syringe() (science_jubilee.tools.Syringe.Syringe method), [1] return_tip() (Pipette-checkpoint.Pipette method) (Pipette-checkpoint.TipTracker method) (science_jubilee.tools.Pipette.Pipette method), [1] (science_jubilee.tools.Pipette.TipTracker method), [1] rinse_cell() (science_jubilee.tools.PneumaticSampleLoader.PneumaticSampleLoader method), [1] Row (class in Labware-checkpoint) (class in science_jubilee.labware.Labware), [1]

S

safe_position (science_jubilee.tools.PneumaticSampleLoader.PneumaticSampleLoader attribute) safe_z (science_jubilee.decks.Deck.Deck property), [1] safe_z_movement() (science_jubilee.Machine.Machine method), [1] save_to_file() (science_jubilee.tools.Spectrometer.SpectroscopyTool method) scale_intensity() (science_jubilee.tools.Spectrometer.SpectroscopyTool static method) scans_to_average() (science_jubilee.tools.Spectrometer.SpectroscopyTool method) science_jubilee module, [1] science_jubilee.calibration module science_jubilee.calibration.CalibrationControlPanel module science_jubilee.decks module, [1] science_jubilee.decks.Deck module, [1] science_jubilee.decks.Plate module, [1] science_jubilee.labware module, [1] science_jubilee.labware.Labware module, [1] science_jubilee.Machine module, [1] science_jubilee.tools module, [1] science_jubilee.tools.AS7341 module, [1] science_jubilee.tools.Camera module science_jubilee.tools.HTTPSyringe module, [1] science_jubilee.tools.Loop module, [1] science_jubilee.tools.PeristalticPumps module, [1] science_jubilee.tools.Pipette module, [1] science_jubilee.tools.piserver module, [1] science_jubilee.tools.PneumaticSampleLoader module, [1] science_jubilee.tools.PumpDispenser module, [1] science_jubilee.tools.Sonicator module, [1] science_jubilee.tools.Spectrometer module science_jubilee.tools.Syringe module, [1] science_jubilee.tools.SyringeExtruder module, [1] science_jubilee.tools.Tool module, [1]

science_jubilee.tools.WebCamera module, [1] science_jubilee.utils module science_jubilee.utils.Handlers module scratch_fp (in module science_jubilee.tools.piserver) send_message() (Handlers.SlackInputHandler method) (science_jubilee.utils.Handlers.SlackInputHandler method) sensor_config (science_jubilee.tools.AS7341.AS7341 attribute) ser (science_jubilee.Machine.Machine attribute) serial_port (science_jubilee.tools.AS7341.AS7341 attribute) session (science_jubilee.Machine.Machine attribute) set_clean_tip() (Labware-checkpoint.Well method) (science_jubilee.labware.Labware.Well method), [1] set_cleaning_protocol() (science_jubilee.tools.Sonicator.Sonicator method), [1] set_has_tip() (Labware-checkpoint.Well method) (science_jubilee.labware.Labware.Well method), [1] set_pulsewidth() (science_jubilee.tools.HTTPSyringe.HTTPSyringe method), [1] set_tool_offset() (science_jubilee.Machine.Machine method), [1] shape (Labware-checkpoint.Labware property) (Labware-checkpoint.Well attribute) (science_jubilee.labware.Labware.Labware property), [1] (science_jubilee.labware.Labware.Well attribute), [1] show_frame() (science_jubilee.tools.Camera.Camera method) simulated (science_jubilee.Machine.Machine attribute) SlackInputHandler (class in Handlers) (class in science_jubilee.utils.Handlers) Slot (class in science_jubilee.decks.Deck), [1] slot (Labware-checkpoint.Labware attribute) (Labware-checkpoint.Well attribute) (science_jubilee.labware.Labware.Labware attribute) (science_jubilee.labware.Labware.Well attribute), [1] slot_index (science_jubilee.decks.Deck.Slot attribute), [1] slots (science_jubilee.decks.Deck.Deck attribute) (science_jubilee.decks.Deck.SlotSet attribute), [1] slots_data (science_jubilee.decks.Deck.Deck attribute) SlotSet (class in science_jubilee.decks.Deck), [1] slotType (science_jubilee.decks.Deck.Deck property), [1] sonicate_well() (science_jubilee.tools.Sonicator.Sonicator method), [1] Sonicator (class in science_jubilee.tools.Sonicator), [1] spectrometer (science_jubilee.tools.Spectrometer.SpectroscopyTool attribute) SpectroscopyTool (class in science_jubilee.tools.Spectrometer) split_response_objects() (science_jubilee.Machine.Machine method), [1] status() (science_jubilee.tools.HTTPSyringe.HTTPSyringe method), [1] still_url (science_jubilee.tools.WebCamera.Camera attribute) stir() (Pipette-checkpoint.Pipette method) (science_jubilee.tools.Pipette.Pipette method), [1] substract() (Labware-checkpoint.Point method) (science_jubilee.labware.Labware.Point method), [1] Syringe (class in science_jubilee.tools.Syringe), [1] syringe_diameter (science_jubilee.tools.SyringeExtruder.SyringeExtruder attribute) syringe_loaded (science_jubilee.tools.HTTPSyringe.HTTPSyringe attribute) SyringeExtruder (class in science_jubilee.tools.SyringeExtruder), [1]

T

tip_check() (in module Pipette-checkpoint) (in module science_jubilee.tools.Pipette), [1] tip_length (Labware-checkpoint.Labware property) (science_jubilee.labware.Labware.Labware property), [1] tip_overlap (Labware-checkpoint.Labware property) (science_jubilee.labware.Labware.Labware property), [1] TipTracker (class in Pipette-checkpoint) (class in science_jubilee.tools.Pipette), [1] Tool (class in science_jubilee.tools.Tool), [1] tool (science_jubilee.Machine.Machine attribute) tool_axis (science_jubilee.tools.PeristalticPumps.PeristalticPumps attribute) tool_lock() (science_jubilee.Machine.Machine method), [1] tool_offset (science_jubilee.tools.Tool.Tool attribute) tool_unlock() (science_jubilee.Machine.Machine method), [1] tool_z_offsets (science_jubilee.Machine.Machine property), [1]

ToolConfigurationError, [1] tools (science_jubilee.Machine.Machine attribute) ToolStateError, [1] top() (Labware-checkpoint.Well method) (science_jubilee.labware.Labware.Well method), [1] top_ (Labware-checkpoint.Well property) (science_jubilee.labware.Labware.Well property), [1] totalLiquidVolume (Labware-checkpoint.Well attribute) (science_jubilee.labware.Labware.Well attribute), [1] totalslots (science_jubilee.decks.Deck.Deck property), [1] transfer() (Pipette-checkpoint.Pipette method) (science_jubilee.tools.Loop.Loop method), [1] (science_jubilee.tools.Pipette.Pipette method), [1] (science_jubilee.tools.Syringe.Syringe method), [1] trash (Pipette-checkpoint.Pipette attribute) (science_jubilee.tools.Pipette.Pipette attribute)

U

unpause_queue() (science_jubilee.tools.PneumaticSampleLoader.PneumaticSampleLoader method), [1] update_status() (science_jubilee.tools.PneumaticSampleLoader.PneumaticSampleLoader method), [1] update_z_offset() (Pipette-checkpoint.Pipette method) (science_jubilee.tools.Pipette.Pipette method), [1]

url (science_jubilee.tools.PneumaticSampleLoader.PneumaticSampleLoader attribute) use_tip() (Pipette-checkpoint.TipTracker method) (science_jubilee.tools.Pipette.TipTracker method), [1] username (science_jubilee.tools.PneumaticSampleLoader.PneumaticSampleLoader attribute)

V

video_feed() (science_jubilee.tools.WebCamera.Camera method), [1] video_stream() (science_jubilee.tools.Camera.Camera method) video_url (science_jubilee.tools.WebCamera.Camera attribute) view_image() (science_jubilee.tools.WebCamera.Camera method), [1]

vol2move() (Pipette-checkpoint.Pipette method) (science_jubilee.tools.Pipette.Pipette method), [1] volume_units (Labware-checkpoint.Labware property) (science_jubilee.labware.Labware.Labware property), [1]

W

wake_time (science_jubilee.Machine.Machine attribute) waste (science_jubilee.tools.PumpDispenser.PumpDispenser attribute) wavelengths (science_jubilee.tools.Spectrometer.MeasurementManager attribute) (science_jubilee.tools.Spectrometer.SpectroscopyTool property) webhook (Handlers.SlackInputHandler attribute) Well (class in Labware-checkpoint) (class in science_jubilee.labware.Labware), [1] wells (Labware-checkpoint.WellSet attribute) (science_jubilee.labware.Labware.WellSet attribute), [1]

wells_data (Labware-checkpoint.Labware attribute) (science_jubilee.labware.Labware.Labware attribute) WellSet (class in Labware-checkpoint) (class in science_jubilee.labware.Labware), [1] wipe_nozzle() (science_jubilee.tools.SyringeExtruder.SyringeExtruder method), [1] wipe_tower() (science_jubilee.tools.SyringeExtruder.SyringeExtruder method), [1] withWellOrder() (Labware-checkpoint.Labware method) (science_jubilee.labware.Labware.Labware method), [1]

X

x (Labware-checkpoint.Point attribute) (Labware-checkpoint.Well property) (science_jubilee.labware.Labware.Point attribute), [1] (science_jubilee.labware.Labware.Well property), [1]

xDimension (Labware-checkpoint.Well attribute) (science_jubilee.labware.Labware.Well attribute), [1]

Y

y (Labware-checkpoint.Point attribute) (Labware-checkpoint.Well property) (science_jubilee.labware.Labware.Point attribute), [1] (science_jubilee.labware.Labware.Well property), [1]

yDimension (Labware-checkpoint.Well attribute) (science_jubilee.labware.Labware.Well attribute), [1]

Z

z (Labware-checkpoint.Point attribute) (Labware-checkpoint.Well property) (science_jubilee.labware.Labware.Point attribute), [1] (science_jubilee.labware.Labware.Well property), [1]